As leader
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Tongue in Groove (JMT, 1992)
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RAIsedpleasuredot (New World, 1993)
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Crackshot (Avant, 1995)
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Down Home (Intuition, 1997)
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We'll Soon Find Out (Intuition, 1999)
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Beyond (Auditorium, 2001)
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Venice, dal vivo (D'Autres Cordes, 2010)
As sideman
With John Abercrombie
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Cat 'n' Mouse (ECM, 2000)
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Class Trip (ECM, 2003)
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The Third Quartet (ECM, 2006)
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Wait Till You See Her (ECM, 2008)
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Within a Song (ECM, 2012)
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39 Steps (ECM, 2013)
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Up and Coming (ECM, 2017)
With the Toshiko Akiyoshi
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Tuttie Flutie (Discomate, 1980)
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European Memoirs (Victor, 1982)
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Toshiko Akiyoshi Trio (Eastworld, 1983)
With Laurie Anderson
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Strange Angels (Warner Bros., 1989)
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Bright Red (Warner Bros., 1994)
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The Ugly One with the Jewels (Warner Bros., 1995)
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Life on a String (Elektra Nonesuch, 2001)
With Tim Berne
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Miniature (JMT, 1988)
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Tim Berne's Fractured Fairy Tales (JMT, 1989)
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I Can't Put My Finger on It (JMT, 1991)
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Diminutive Mysteries (Mostly Hemphill) (JMT, 1993)
With David Bowie
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Outside (Arista/BMG, 1995)
With Jakob Bro
With Uri Caine
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Urlicht / Primal Light (Winter & Winter, 1997)
With James Carter
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Chasin' the Gypsy (Atlantic, 2000)
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Heaven on Earth (Half Note, 2009)
With Anthony Coleman
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Sephardic Tinge (Tzadik, 1995)
With Dave Douglas
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In Our Lifetime (New World, 1994)
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Stargazer (Arabesque, 1996)
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Soul on Soul (RCA, 2000)
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Freak In (RCA Bluebird, 2003)
With Mark Feldman
With Bill Frisell
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Lookout for Hope (ECM, 1988)
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Before We Were Born (Elektra/Musician, 1989)
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Is That You? (Elektra Nonesuch, 1990)
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Where in the World? (Elektra Nonesuch, 1991)
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Have a Little Faith (Elektra Nonesuch, 1992)
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This Land (Elektra Nonesuch, 1993)
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Go West: Music for the Films of Buster Keaton (Elektra Nonesuch, 1995)
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The High Sign/One Week (Elektra Nonesuch, 1995)
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Live (Gramavision, 1995)
With Fred Frith
With Richard Galliano
With Jim Hall
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These Rooms (Columbia, 1988)
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Hemispheres (ArtistShare, 2008) with Bill Frisell
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Conversations (ArtistShare, 2009)
With Fred Hersch
With Haino Keiji
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An Unclear Trial: More Than This (Avant, 1998)
With Marc Johnson
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The Sound of Summer Running (Verve, 1998)
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Shades of Jade (ECM, 2005)
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Swept Away (ECM, 2012)
- With Lee Konitz
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Sound of Surprise (RCA Victor, 1999)
With Steve Kuhn
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Remembering Tomorrow (ECM, 1995)
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Mostly Coltrane (ECM, 2008)
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Wisteria (ECM, 2012) with Steve Swallow
With Joe Lovano
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Flights of Fancy: Trio Fascination Edition Two (Blue Note 2000)
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Sound Prints (Blue Note, 2013 [2015])
With Pat Martino
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With Carmen McRae
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Live at Ronnie Scott's (Pye, 1977)
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At the Great American Music Hall (Blue Note, 1977)
With Gary Peacock
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Tangents (ECM, 2017)
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Now This (ECM, 2015)
With Enrico Pieranunzi
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New Lands (Timeless, 1984)
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Deep Down (Soul Note, 1986)
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Play Morricone (CAM Jazz, 2001)
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Current Conditions (CAM Jazz, 2003)
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Play Morricone 2 (CAM Jazz, 2003)
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Ballads (CAM Jazz, 2006)
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Live in Japan (CAM Jazz, 2007)
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As Never Before (CAM Jazz, 2008)
With Hank Roberts
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Black Pastels (JMT, 1988)
With Herb Robertson
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Transparency (JMT, 1985)
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X-Cerpts: Live at Willisau (JMT, 1987)
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Shades of Bud Powell (JMT, 1988)
With John Scofield
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Grace Under Pressure (Blue Note, 1992)
With Julian Siegel
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Live at the Vortex (Basho Records, 2008)
With John Taylor
With Toots Thielemans
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Only Trust Your Heart (Concord, 1988)
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Do Not Leave Me (Stash, 1989)
With Roseanna Vitro
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The Time of My Life: Roseanna Vitro Sings the Songs of Steve Allen (Sea Breeze, 1999; recorded 1986)
With John Zorn
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The Big Gundown (Icon, 1985)
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Spy vs Spy (Elektra/Musician, 1989)
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Naked City (Elektra Nonesuch, 1989) with Naked City
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Torture Garden (Shimmy Disc, 1990) with Naked City
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Grand Guignol (Avant, 1992) with Naked City
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Heretic (Avant, 1992) with Naked City
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Leng Tch'e (Toy's Factory, 1992) with Naked City
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Radio (Avant, 1993) with Naked City
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Absinthe (Avant, 1993) with Naked City
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Masada: Alef (DIW, 1994) with Masada
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Masada: Beit (DIW, 1994) with Masada
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Masada: Gimel (DIW, 1994) with Masada
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Masada: Dalet (DIW, 1995) with Masada
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Masada: Hei (DIW, 1995) with Masada
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Masada: Vav (DIW, 1995) with Masada
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Filmworks III: 1990–1995 (Toys Factory, 1996)
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Masada: Zayin (DIW, 1996) with Masada
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Masada: Het (DIW, 1997) with Masada
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Masada: Tet (DIW, 1997) with Masada
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Masada: Yod (DIW, 1997) with Masada
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Filmworks IV: S&M + More (Tzadik, 1997)
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New Traditions in East Asian Bar Bands (Tzadik, 1997)
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The Circle Maker (Tzadik, 1997)
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Black Box (Tzadik, 1997) with Naked City
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Taboo & Exile (Tzadik, 1999)
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Live in Jerusalem 1994 (Tzadik, 1999) with Masada
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Live in Taipei 1995 (Tzadik, 1999) with Masada
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Live in Middelheim 1999 (Tzadik, 1999) with Masada
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Live in Sevilla 2000 (Tzadik, 2000)
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The Gift (Tzadik, 2001)
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Live at Tonic 2001 (Tzadik, 2001) with Masada
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Naked City Live, Vol. 1: The Knitting Factory 1989 (Tzadik, 2002) with Naked City
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First Live 1993 (Tzadik, 2002) with Masada
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50th Birthday Celebration Volume 4 (Tzadik, 2004) with Electric Masada
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50th Birthday Celebration Volume 7 (Tzadik, 2004) with Masada
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Naked City: The Complete Studio Recordings (Tzadik, 2005) with Naked City
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Electric Masada: At the Mountains of Madness (Tzadik, 2005) with Electric Masada
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50th Birthday Celebration Volume 11 (Tzadik, 2005) with Bar Kokhba Sextet
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Sanhedrin 1994–1997 (Tzadik, 2005) with Masada
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Moonchild: Songs Without Words (Tzadik, 2005) with Moonchild Trio
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Astronome (Tzadik, 2006) with Moonchild Trio
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Six Litanies for Heliogabalus (Tzadik, 2007) with Moonchild Trio
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The Crucible (Tzadik, 2008) with Moonchild Trio
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Lucifer: Book of Angels Volume 10 (Tzadik, 2008) with Bar Kokhba Sextet
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The Dreamers (Tzadik, 2008) with The Dreamers
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Stolas: Book of Angels Volume 12 (Tzadik, 2009) with Masada Quintet
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O'o (Tzadik, 2009) with The Dreamers
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Ipsissimus (Tzadik, 2010) with Moonchild
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Ipos: Book of Angels Volume 14 (Tzadik, 2010) with The Dreamers
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Nova Express (Tzadik, 2011) with the Nova Quartet
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At the Gates of Paradise (Tzadik, 2011)
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A Dreamers Christmas (Tzadik, 2011) with The Dreamers
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Templars: In Sacred Blood (Tzadik, 2012) with Moonchild
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A Vision in Blakelight (Tzadik, 2012)
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The Concealed (Tzadik, 2012)
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Dreamachines (Tzadik, 2013) with the Nova Quartet
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On Leaves of Grass (Tzadik, 2014) with the Nova Quartet
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Pellucidar: A Dreamers Fantabula (Tzadik, 2015) with The Dreamers
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